Heart Disease Analysis by using Machine Learning.

Heart diseases refers to a group of conditions that affects your heart. Diseases under the heart disease umbrella include blood vessel diseases, such as coronary artery disease, Myocardial infraction, heart failure, heart rhythm problems (arrhythmia) and heart defects you’re born with (congenital heart defects), among others. Risk factor causing heart diseases following:

Overweight
High Blood pressure
High-cholesterol level
Diabetes Mellitus
Being inactive

GitHub Code Link

import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
from matplotlib import rcParams
import seaborn as sns
import warnings
warnings.filterwarnings('ignore')
from sklearn.neighbors import KNeighborsClassifier

df = pd.read_csv('dataset.csv')
print(df.head())

Output:

print(df.info())

Output:

print(df.describe())

Output:

Feature Selection

To get correlation of each feature in the data set

import seaborn as sns
corrmat = df.corr()
top_corr_features = corrmat.index
plt.figure(figsize=(16,16))
#plot heat map
g=sns.heatmap(df[top_corr_features].corr(),annot=True,cmap="RdYlGn")
plt.show()

Output:

It’s always a good practice to work with a data set where the target classes are of approximately equal size. Thus, let’s check for the same :

sns.set_style('whitegrid')
sns.countplot(x='target',data=df,palette='RdBu_r')
plt.show()

Output:

Data Processing

After exploring the data set, I observed that I need to convert some categorical variables into dummy variables and scale all the values before training the Machine Learning models.

First, I’ll use the get_dummies method to create dummy columns for categorical variables.

dataset = pd.get_dummies(df, columns = ['sex', 'cp', 
                                        'fbs','restecg', 
                                        'exang', 'slope', 
                                        'ca', 'thal'])
from sklearn.model_selection import train_test_split
from sklearn.preprocessing import StandardScaler
standardScaler = StandardScaler()
columns_to_scale = ['age', 'trestbps', 'chol', 'thalach', 'oldpeak']
dataset[columns_to_scale] = standardScaler.fit_transform(dataset[columns_to_scale])
dataset.head()

Output:

y = dataset['target']
X = dataset.drop(['target'], axis = 1)

from sklearn.model_selection import cross_val_score
knn_scores = []
for k in range(1,21):
    knn_classifier = KNeighborsClassifier(n_neighbors = k)
    score=cross_val_score(knn_classifier,X,y,cv=10)
    knn_scores.append(score.mean())

plt.plot([k for k in range(1, 21)], knn_scores, color = 'red')
for i in range(1,21):
    plt.text(i, knn_scores[i-1], (i, knn_scores[i-1]))
plt.xticks([i for i in range(1, 21)])
plt.xlabel('Number of Neighbors (K)')
plt.ylabel('Scores')
plt.title('K Neighbors Classifier scores for different K values')
plt.show()

Output:

knn_classifier = KNeighborsClassifier(n_neighbors = 12)
score=cross_val_score(knn_classifier,X,y,cv=10)
score.mean()

Output:

Random Forest Classifier

from sklearn.ensemble import RandomForestClassifier
randomforest_classifier= RandomForestClassifier(n_estimators=10)
score=cross_val_score(randomforest_classifier,X,y,cv=10)
score.mean()

Output:

Blog

Heart Disease Analysis by using Machine Learning.

Mohammad Sakib Mahmood

Feature Selection

Data Processing

Random Forest Classifier

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